Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932320.1_cds_XP_016478859.1_70459
CDS Infomation

[gene=LOC107800224] [db_xref=GeneID:107800224] [protein=116 kDa U5 small nuclear ribonucleoprotein component-like] [protein_id=XP_016478859.1] [location=join(20060..20800,21148..21216,21315..22508,22655..22753,22833..22991,23114..23199,23266..23464,23655..23765,23865..24071,24396..24494)] [gbkey=CDS]
Sequence

ATGGATGAAAGTTTATATGATGAATTTGGGAACTATATTGGTCCTGAAATTGAGTCTGAT
CAGGAAAGTGATAGGGAAGAGGAAGATGAGGATCTCCCTGAGAGAAGTGATGATGAGAGG
GCTGCATCTGATGGCGAGCAACCTGGTGCATCGAATGGATGGCTGGCCACTCAAGAGGAT
GTTGACATGGATAACCAAGTTGTCCTTGCTGAAGACAAGAAATACTACCCAACAGCCGAA
GAGGTTTACGGTGAAGAGGTCGAGACATTGGTGATGGATGAAGATGAACAGCCTCTTGAA
ATGCCAATAATTAAACCGGTGAAGAATCTCAAGTTTGAACTTGGGGTAAAGGATTCGTCC
ACCTATGTTTCGACTCAATTTCTCTTAGGTCTGATGTCGAACCCAGCATTGGTTCGAAAT
GTTGCTTTAGTGGGACACGTGCATCACGGGAAGACTTTGTTTATGGATATGCTGGTGGAG
CAAACCCACCATATATCTACTTTTGATCAGAATAGTGAGAAGCATATGAGGTATACAGAC
ACAAGAATAGATGAGCAAGAAAGGAGGATATCAATTAAGTCTGTCCCTATGTCACTCGTC
CTGGAAGACAGCAATTCAAAGTCTTACCTCTGCAACATTATGGATGCTCCTGGTCATGTC
AACTTCTCGGATGAGATGACAGCTGCTTTGAGACTTTCTGATGGTGCAGTTTTGATTGTT
GATGCTGTTGAAGGAGTGATGGTAAATACAGAAAGGGCCATTCGGCATGCGATTCAAGAA
CGTATTCCGATTGTTCTTGTGATTAACAAGGTTGACAGACTGATAACTGAGCTTAAATTG
CCTCCAAAGGATGCCTACTTCAAATTAAAGCACATAATTGAAGCTGTCAACAATCAAGTT
ACAGCTGCCAAGTCCATAGCTGGAAATGCACAAGTATTCGATCCTGCGTTAGGGAATGTC
TGCTTTGCAAGTGCAACAGCAGGATGGTCGTTCACACTGCAGTCATTTGCCAAACTGTAT
GTTAAGCTTCATGGAGTTGCATTTGATGCCAACAAGTTTGCTTCGCGGCTTTGGGGGGAC
TTCTACTTTGATCCTGACACAAGAAGTTTCAAGAAGAAACCGCCTGCAAGTGGGGTCGAA
AGATCTTTTGTGCAGTTCGTTCTTGAACCTCTTTACAAAATCTATAGCCAAGTGATTGGA
GAGCACAAGAAGAGTGTTGAAGCAACCCTGGCAGAACTTGGTGTGACGCTTAGCAATGCA
GCTTACCGTCTAAATGTTAGGCCTCTTCTGAGGCTGGCTTGCAGTGCTGTTTTTGGCACT
GCCACTGGCTTTACTGACATGTTGGTTCATCACATTCCTTCTGCTAAAGCTGCTGCAGCT
AGGAAAGTGGAGCACATATACACGGGTCCAAAGGATTCAGCAATTTACAAAGCAATGGAA
GATTGTGACTCCGCTGGCCCTTTGATGGTTAATGTGACCAAGCTGTATCCCAAATCAGAT
TGTAGTGTTTTTGATGCTTTTGGTAGGGTTTACAGCGGGGAAATAATGACAGGGCAGACA
GTACGCGTTTTGGGAGAGGGCTATTCACCTGATGATGAGGAGGATATGACTGTAAAAGAG
GTCACAAAGCTGTGGGTATATCAAGCTCGATACAGGATACCCATAAGTAAGGCTCCTCCT
GGTGCTTGGGTGTTGATTGAAGGAGTGGATGCTTCAATCATGAAAACTGCTACTCTTTGT
AACTCGGAATTTGGCGAGGATGTGTACATATTCCGGCCCCTTCAGTTCAATACTCTTCCC
GTGGTGAAAACAGCAACTGAGCCTTTGAATCCTAGCGAGTTGCCCAAAATGGTGGAGGGG
CTTAGGAAAATCAGCAAGAGTTATCCTCTTGCAATCACAAAGGTTGAAGAGTCTGGTGAA
CACACAATATTGGGTACTGGTGAATTGTACCTAGATTCCATAATGAAGGACCTTAGGGAG
CTTTACTCCGAGGTGGAAGTGAAGGTGGCTGATCCAGTTGTTTCATTCTGCGAAACTGTA
GTGGAGTCGTCTTCAATGAAATGTTTTGCTGAAACACCTAATAAGAAAAATAAAATTACC
ATGATTGCGGAACCGTTAGAGAGAGGACTTGCTGAGGACATCGAGAACAGTGTTGTAAGC
ATAGATTGGCCTAGAAAGAAACTTGGTGACTTTTTTCAAACCAAATATGACTGGGATCTG
CTTGCTGCACGATCTATTTGGGCATTTGGACCTGATAAGCAGGGACCTAACATCTTATTG
GATGATACACTCTCCAGTGAAGTGGACAAGAGCTTGTTGAATGCTGTTAAAGATTCTATT
GTTCAGGGGTTTCAATGGGGAGCTCGGGAAGGACCCCTGTGTGATGAGCCCATTAGAAAT
GTTAAATTCAAAATAGTTGATGCAAAGATTGCACTTGAGCCACTTAATCGTGGAACAGGT
CAGATTATTCCAACTGCACGACGTGTAGCCTACTCTTCTTTCCTTATGGCGACACCCAGG
CTTATGGAACCTGTGTATTATGTGGAGATCCAAACACCCATGGATTGTCTCTCTGCTATA
TACACCGTGTTGTCTCGCAGGCGTGGACATGTTACTGCTGATGTTCCTCAACCTGGGACC
CCTGCCTACATCGTCAAGGCATTTTTACCTGTTATCGAGTCCTTTGGTTTTGAAACTGAC
TTGAGGTATCACACCCAAGGGCAGGCGTTTTGTCTTTCAGTGTTTGATCATTGGGCTATT
GTTCCTGGAGATCCTCTTGACAAGAGCATCGTTTTGCGACCACTAGAGCCTGCCCCAATT
CAGCATCTGGCTCGTGAGTTCATGGTGAAGACAAGGCGTAGAAAGGGAATGAGTGAAGAC
GTGAGCATCAACAAATTCTTTGATGAGGCTATGATGGTGGAGCTTGCGCAGCAGGATGCT
GATCTTCACCTGCAGATGATGTAG

Peptide Sequence

PEP ID

XP_016478859.1
PEP Infomation

PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Nicotiana tabacum]
Sequence

MDESLYDEFGNYIGPEIESDQESDREEEDEDLPERSDDERAASDGEQPGASNGWLATQED
VDMDNQVVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPALVRNVALVGHVHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMTAALRLSDGAVLIV
DAVEGVMVNTERAIRHAIQERIPIVLVINKVDRLITELKLPPKDAYFKLKHIIEAVNNQV
TAAKSIAGNAQVFDPALGNVCFASATAGWSFTLQSFAKLYVKLHGVAFDANKFASRLWGD
FYFDPDTRSFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
DCDSAGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNSEFGEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENSVVS
IDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIALEPLNRGTGQIIPTARRVAYSSFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM

Transcript Sequence

Gene sequence data has not been registered.